This plugin generates domain co-occurrence networks in multiple organisms using information in iRefindex.
This plugin generates relational network using triples from several major biological databases.
In short, triple is a relation made from "Subject", "Predicate", and "Object", like "A enzyme(Subject)", "catalyzes(Predicate)", "A reaction(Object)".
This is Cytoscape plugin version of Genemania by Bader lab.
Genemania is a gene prediction software. Jason Montojo talked about the plugin version of Genemania.
A geneset enrichment analysis plugin as its name suggests.
Please see reference
A client plugin for NCIBI database MiMI
Layouting and searching plugins by Gang Su.
So the names are (G)Lay[out] and (G)Searcher.
He also talked at last Cytoscape retreat 2008 as a Google summer of code project student.
This new GLay can utilize igraph layout algorithms by using C++ and JNI (However compatible with only Windows).
GSearcher enables to regular expression search to multiple attribute.
You can see these talk videos from NCIBI.